2023

• L. Barkat, M. Freiman and H. Azhari. Image Translation of Breast Ultrasound to Pseudo Anatomical Display by CycleGAN, J. of Bioengineering, Vol. 10(3). March 22, 2023.

2022

• I. Guez, G. Focht, M.L.C. Greer, R. Cytter-kuint, L. Pratt, D.A. Castro, D. Turner, A.M. Griffiths, and M. Freiman. Development of a multimodal machine-learning fusion model to non-invasively assess ileal Crohn’s disease endoscopic activity, J. of Computer Methods and Programs in Biomedicine, Vol. 227. Dec 2022.
• S. Khawaled and M. Freiman. NPBDREG: Uncertainty Assessment in Diffeomorphic Brain MRI Registration using a Non-parametric Bayesian Deep-Learning Based Approach, J. of Computerized Medical Imaging and Graphics, June 2, 2022.

2021

• P.A. van Diemen, M.J. Bom, R.S. Driessen, S.P. Schumacher, H. Everaars, R.W. de Winter, P.M. van de Ven, M. Freiman, L. Goshen, D. Heijtel, E. Langzam, J.K. Min, J.A. Leipsic, P.G. Raijmakers, A.C. van Rossum, I. Danad, and P. Knaapen. Prognostic Value of RCA Pericoronary Adipose Tissue CT-Attenuation Beyond High-Risk Plaques, Plaque Volume, and Ischemia, J. American College of Cardiology Imaging (JACC_Img), 2021.

2019

• M. Freiman, R. Manjeshwar, and L. Goshen. Unsupervised Abnormality Detection through Mixed Structure Regularization (MSR) in Deep Sparse Autoencoders, Medical Physics, Vol. 46(5) 2223-2231, 2019.
• Y. Lamash, S. Kurugol, M. Freiman, J.M. Perez-Rossello, M.J. Callahan, A. Bousvaros, S.K. Warfield. Curved Planar Reformatting and CNN-Based Segmentation of the Small Bowel for Visualization and Quantitative Assessment of Pediatric Crohn's Disease from MRI, J. of Magnetic Resonance Imaging (JMRI), Vol. 49(6) 1565-1576, 2019.

2018

• M. Freiman, H. Nickisch, H. Schmitt, M. Vembar, P. Maurovich-Horvat , P.M. Donnelly, and L. Goshen. A Functionally-Personalized Boundary Condition Model to Improve Estimates of Fractional Flow Reserve with CT (CT-FFR), Medical Physics, Vol 45(3) 1170-1177, 2018.

2017

• S. Kurugol, M. Freiman, O. Afacan, L. Domachevsky, J.M Perez-Rossello, M.J. Callahan, S.K.Warfield. Compensating for the Effect of Motion on Parameter Estimation in Abdominal Diffusion-Weighted MRI by Simultaneous Image Registration and Model Estimation, Medical Image Analysis, Vol. 39 124-132, 2017.
• M. Freiman, H. Nickisch, S. Prevrhal, H. Schmitt, P. Maurovich-Horvat, P.M. Donnelly, Vembar, and L. Goshen. Improving CCTA Based Lesions' Hemodynamic Significance Assessment by Accounting for Partial Volume Modeling in Automatic Coronary Lumen Segmentation, Medical Physics, Vol 44(3) 1040-1049, 2017.

2016 and earlier

• S. Kurugol, M. Freiman, O. Afacan, J.M Perez-Rossello, M.J. Callahan, S.K. Warfield. Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) for Diffusion-Weighted MRI, Medical Image Analysis, Vol. 32 173-183, 2016.
• V. Taimouri, O. Afacan, J.M Perez-Rossello, M.J. Callahan, R.V. Mulkern, S.K. Warfield, M. Freiman. Spatially Constrained Incoherent Motion (SCIM) Method Improves Diffusion-Weighted MRI Signal Decay Analysis in the Liver and Spleen, Medical Physics, Vol. 42(4) 1895-1903, 2015.
• S. Bairdain, M. Freiman, M.J. Callahan, S.K. Warfield. Incoherent-Motion Magnetic Resonance Imaging and Pediatric Crohn Disease, Archives of Clinical and Experimental Surgery, Vol. 5(2) 116-120, 2016.
• Y. Edrei, M. Freiman, M. Sklair, G. Tsarfati, E. Gross, L. Joskowicz, R. Abramovitch. Quantitative Functional MRI Biomarkers Improved Early Detection of Colorectal Liver Metastases, J. of Magnetic Resonance Imaging (JMRI), Vol. 39(5) 1246-1253, 2014.
• M. Freiman, J.M. Perez-Rossello, M.J. Callahan, S.D. Voss, K. Ecklund, R.V. Mulkern, S.K. Warfield. Reliable Estimation of Incoherent Motion Parametric Maps from Diffusion-weighted MRI Using Fusion Bootstrap Moves, Medical Image Analysis, Vol. 17(3) 325-362, 2013.
• M. Freiman, J.M. Perez-Rossello, M.J. Callahan, M. Bittman, R.V. Mulkern, A. Bousvaros, S.K. Warfield. Characterization of fast and Slow Diffusion from Diffusion-Weighted MRI of Pediatric Crohn's Disease, J. of Magnetic Resonance Imaging (JMRI), Vol. 37(1) 156-163, 2013.
• M. Freiman, S.D Voss, R.V. Mulkern, J. Perez-Rossello, M.J. Callahan, S.K. Warfield. In-Vivo Assessment of Optimal b-Value Range for Perfusion-Insensitive Apparent Diffusion Coefficient Imaging, Medical Physics, Vol. 39(8) 4832-4839, 2012.
• M. Freiman, L. Joskowicz, N. Broide, M. Natanzon, E. Nammer, O. Shilon, L. Weizman, J. Sosna. Patient-Specific Carotid Arteries Modeling: A Nearly Automatic Model-Based Graph-Cut Approach, Int. J. of Computer Assisted Radiology and Surgery (IJCARS), Vol. 7(5) 799-812, 2012.
• Y. Sela, M. Freiman, E. Dery, R. Safadi, O. Pappo, L. Joskowicz, R. Abramovitch. fMRI Based Hierarchical SVM Model for the Classification and Grading of Liver Fibrosis, IEEE Trans. Biomedical Engineering, Vol. 58(9) 2574-2581, 2011.
• R. Hameeteman, M.A. Zuluaga, M. Freiman, L. Joskowicz, O. Cuisenaire, L.F. Valencia, M.A. Gülsün, K. Krissian, J. Mille, W.C. Wong, M. Orkisz, H. Tek, M. H. Hoyos, F. Benmansour, A.C. Chung; S. Rozie, M. van Gils, L. van den Borne, J. Sosna, P. Berman, N. Cohen, P.C. Douek, I. Sánchez, M. Aissat, M. Schaap, C.T. Metz, G.P. Krestin, A. van der Lugt, W.J. Niessen T. van Walsum. Evaluation Framework for Carotid Bifurcation Lumen Segmentation and Stenosis Grading. Medical Image Analysis, Vol. 15(4) 477-488, 2011.
• M. Freiman, M. Werman, L. Joskowicz. Curvelets: A Patient-Specific Prior for Accurate Multi-Modal Image Registration. Medical Image Analysis, Vol. 15(1) 125-132, 2011.
• M. Freiman, O. Cooper, D. Lischinski, L. Joskowicz. Liver Tumors Segmentation from CTA Images Using Voxels Classification and Affinity Constraint Propagation. Int. J. of Computer Assisted Radiology and Surgery (IJCARS), Vol. 6(2) 247-255, 2011.
• R. Shamir, M. Frieman, L. Joskowicz, S. Spektor, Y. Shoshan. Surface-Based Facial Scan Registration in Neuronavigation Procedures: A Clinical Study, J. of Neurosurgery, Vol. 111(6): 1201-1206, 2009.
• M. Freiman, Y. Taieb, O. Eliassaf, L. Joskowicz, Y. Azraq, and J. Sosna. An Iterative Bayesian Approach for Nearly Automatic Liver Segmentation: Algorithm and Validation, Int. J. of Computer Assisted Radiology and Surgery (IJCARS), Vol. 3(5): 439-446, 2008.
• L. Joskowicz, M. Freiman, R. Shamir, M. Shoham, E. Zehavi, Y. Shoshan. Image-Guided System with Miniature Robot for Precise Positioning and Targeting in Keyhole Neurosurgery, Computer-Aided Surgery, Vol. 11(4):181-193, 2006.