Publications

Journal Articles

2024

M Kori, R Buchuk, O Goldzweig, YL Weisband, N Tal, A Ben-Tov, N Ledderman, E Matz, M Freiman, I Dotan, D Turner, DS Shouval, Familial Mediterranean Fever In Patients With Inflammatory Bowel Diseases: A Nationwide Study From The Epi-iirn Rheumatology, May 2024
O Atia, R Buchuk, R Lujan, S Greenfeld, R Kariv, Y Loewenberg Weisband, N Lederman, E Matz, O Ledder, E Zittan, H Yanai, D Shwartz, M Freiman, I Dotan, D Nevo, D Turner, Predictors Of Complicated Disease Course In Children Andadults With Ulcerative Colitis: A Nationwide Study From The Epi-iirn Inflammatory Bowel Diseases, May 2024
J Fhima, J Van Eijgen, M Billen Moulin-Romse, H Brackenier, H Kulenovic, V Debeuf, M Vangilbergen, M Freiman, I Stalmans, JA Behar, Lunet: Deep Learning For The Segmentation Of Arterioles And Venules In High Resolution Fundus Images Physiological Measurement, May 2024
N Avidan, M Freiman, Ma-recon: Mask-aware Deep-neural-network For Robust Fast Mri K-space Interpolation Computer Methods and Programs in Biomedicine, February 2024
L Hazan, G Focht, N Gavrielov, R Reichart, C Friss, R Cytter Kuint, D Turner, M Freiman, P269 Harnessing Natural Language Processing For Structured Information Extraction From Radiology Reports In Crohn's Disease: A Nationwide Study From The Epi-iirn Journal of Crohn's and Colitis, January 2024

2023

L Barkat, M Freiman, H Azhari, Image Translation Of Breast Ultrasound To Pseudo Anatomical Display By Cyclegan Bioengineering, March 2023

2022

I Guez, G Focht, MC Greer, R Cytter-Kuint, L Pratt, DA Castro, D Turner, AM Griffiths, M Freiman, Development Of A Multimodal Machine-learning Fusion Model To Non-invasively Assess Ileal Crohns Disease Endoscopic Activity Computer Methods and Programs in Biomedicine, December 2022

2021

P Van Diemen, M Bom, R Driessen, S Schumacher, H Everaars, R de Winter, P van de Ven, M Freiman, E Langzam, L Goshen, D Heijtel, J Min, J Leipsic, P Raijmakers, A van Rossum, I Danad, P Knaapen, The Prognostic Value Of Pericoronary Adipose Tissue Ct-attenuation Beyond High-risk Plaques, Plaque Volume, And Myocardial Ischemia Journal of the American College of Cardiology, May 2021
P Van Diemen, M Bom, R Driessen, H Everaars, R De Winter, P Van De Ven, M Freiman, L Goshen, E Langzam, J Min, J Leipsic, P Raijmakers, A Van Rossum, I Danad, P Knaapen, Pericoronary Adipose Tissue Attenuation Leads To Improved Prognostication Beyond Atherosclerotic Burden And High-risk Plaques In Patients With Suspected Coronary Artery Disease European Heart Journal - Cardiovascular Imaging, January 2021

2020

P Van Diemen, M Bom, R Driessen, H Everaars, S Schumacher, R De Winter, P Van De Ven, M Freiman, L Goshen, D Heitel, E Langzam, A Van Rossum, I Danad, P Knaapen, Incremental Prognostic Value Of Pericoronary Adipose Tissue Attenuation On Top Of Comprehensive Ccta Assessment European Heart Journal, November 2020

2019

2018

Y Lamash, S Kurugol, M Freiman, JM PerezRossello, MJ Callahan, A Bousvaros, SK Warfield, Curved Planar Reformatting And Convolutional Neural Networkbased Segmentation Of The Small Bowel For Visualization And Quantitative Assessment Of Pediatric Crohn's Disease From Mri Journal of Magnetic Resonance Imaging, October 2018
M Freiman, H Nickisch, H Schmitt, P MaurovichHorvat, PM Donnelly, M Vembar, L Goshen, A Functionally Personalized Boundary Condition Model To Improve Estimates Of Fractional Flow Reserve With Ct (ctffr) Medical Physics, February 2018

2017

S Kurugol, M Freiman, O Afacan, L Domachevsky, JM Perez-Rossello, MJ Callahan, SK Warfield, Motion-robust Parameter Estimation In Abdominal Diffusion-weighted Mri By Simultaneous Image Registration And Model Estimation Medical Image Analysis, July 2017
M Freiman, H Nickisch, S Prevrhal, H Schmitt, M Vembar, P MaurovichHorvat, P Donnelly, L Goshen, Improving Cctabased Lesions' Hemodynamic Significance Assessment By Accounting For Partial Volume Modeling In Automatic Coronary Lumen Segmentation Medical Physics, March 2017

2016 and before

S Kurugol, M Freiman, O Afacan, JM Perez-Rossello, MJ Callahan, SK Warfield, Spatially-constrained Probability Distribution Model Of Incoherent Motion (spim) For Abdominal Diffusion-weighted Mri Medical Image Analysis, August 2016
S Bairdain, M Freiman, J PrezRossell, M Callahan, A Bousvaros, S Warfield, B Linden, Incoherent-motion Magnetic Resonance Imaging And Pediatric Crohn Disease Archives of Clinical and Experimental Surgery (ACES), January 2016
V Taimouri, O Afacan, JM PerezRossello, MJ Callahan, RV Mulkern, SK Warfield, M Freiman, Spatially Constrained Incoherent Motion Method Improves Diffusionweighted Mri Signal Decay Analysis In The Liver And Spleen Medical Physics, March 2015
Y Edrei, M Freiman, M Sklair-Levy, G Tsarfaty, E Gross, L Joskowicz, R Abramovitch, Quantitative Functional Mri Biomarkers Improved Early Detection Of Colorectal Liver Metastases Journal of Magnetic Resonance Imaging, September 2013
M Freiman, JM Perez-Rossello, MJ Callahan, SD Voss, K Ecklund, RV Mulkern, SK Warfield, Reliable Estimation Of Incoherent Motion Parametric Maps From Diffusion-weighted Mri Using Fusion Bootstrap Moves Medical Image Analysis, April 2013
M Freiman, JM PerezRossello, MJ Callahan, M Bittman, RV Mulkern, A Bousvaros, SK Warfield, Characterization Of Fast And Slow Diffusion From Diffusionweighted Mri Of Pediatric Crohn's Disease Journal of Magnetic Resonance Imaging, August 2012
M Freiman, SD Voss, RV Mulkern, JM PerezRossello, MJ Callahan, SK Warfield, In Vivo Assessment Of Optimal Bvalue Range For Perfusioninsensitive Apparent Diffusion Coefficient Imaging Medical Physics, July 2012
Y Sela, M Freiman, E Dery, Y Edrei, R Safadi, O Pappo, L Joskowicz, R Abramovitch, Fmri-based Hierarchical Svm Model For The Classification And Grading Of Liver Fibrosis IEEE Transactions on Biomedical Engineering, September 2011
K Hameeteman, M Zuluaga, M Freiman, L Joskowicz, O Cuisenaire, LF Valencia, M Glsn, K Krissian, J Mille, W Wong, M Orkisz, H Tek, MH Hoyos, F Benmansour, A Chung, S Rozie, M van Gils, L van den Borne, J Sosna, P Berman, N Cohen, P Douek, I Snchez, M Aissat, M Schaap, C Metz, G Krestin, A van der Lugt, W Niessen, T van Walsum, Evaluation Framework For Carotid Bifurcation Lumen Segmentation And Stenosis Grading Medical Image Analysis, August 2011
M Freiman, M Werman, L Joskowicz, A Curvelet-based Patient-specific Prior For Accurate Multi-modal Brain Image Rigid Registration Medical Image Analysis, February 2011
M Freiman, O Cooper, D Lischinski, L Joskowicz, Liver Tumors Segmentation From Cta Images Using Voxels Classification And Affinity Constraint Propagation International Journal of Computer Assisted Radiology and Surgery, June 2010
K Hameeteman, M Freiman, MA Zuluaga, L Joskowicz, S Rozie, MJ Van Gils, L Van den Borne, J Sosna, P Berman, N Cohen, P Douek, I Sanchez, M Aissat, A Van der Lugt, GP Krestin, WJ Niessen, T Van Walsum, Carotid Lumen Segmentation And Stenosis Grading Challenge The MIDAS Journal, March 2010
RR Shamir, M Freiman, L Joskowicz, S Spektor, Y Shoshan, Surface-based Facial Scan Registration In Neuronavigation Procedures: A Clinical Study Journal of Neurosurgery, December 2009
M Freiman, J Frank, L Weizman, E Nammer, O Shilon, L Joskowicz, J Sosna, Nearly Automatic Vessels Segmentation Using Graph-based Energy Minimization The MIDAS Journal, August 2009
M Freiman, O Eliassaf, Y Taieb, L Joskowicz, Y Azraq, J Sosna, An Iterative Bayesian Approach For Nearly Automatic Liver Segmentation: Algorithm And Validation International Journal of Computer Assisted Radiology and Surgery, July 2008
Y Taieb, O Eliassaf, M Freiman, L Joskowicz, J Sosna, An Iterative Bayesian Approach For Liver Analysis: Tumors Validation Study The MIDAS Journal, July 2008
L Joskowicz, R Shamir, M Freiman, M Shoham, E Zehavi, F Umansky, Y Shoshan, Image-guided System With Miniature Robot For Precise Positioning And Targeting In Keyhole Neurosurgery Computer Aided Surgery, July 2006
L Joskowicz, M Shoham, R Shamir, M Freiman, E Zehavi, Y Shoshan, Miniature Robot-based Precise Targeting System For Keyhole Neurosurgery: Concept And Preliminary Results International Congress Series, May 2005

Conference Papers

2024

Y Zaffrani-Reznikov, O Afacan, S Kurugol, S Warfield, M Freiman, Qdwi-morph: Motion-compensated Quantitative Diffusion-weighted Mri Analysis For Fetal Lung Maturity Assessment 2023 ISMRM & ISMRT Annual Meeting, Toronto, ON, Canada June 03 - 08, 2023
S Khawaled, M Freiman, Npb-rec: Non-parametric Assessment Of Uncertainty In Deep-learning-based Mri Reconstruction From Undersampled Data 2023 ISMRM & ISMRT Annual Meeting, Toronto, ON, Canada June 03 - 08, 2023
E Hanania, L Barkat, I Cohen, H Azhari, M Freiman, Deep-learning-based Group-wise Motion Correction For Myocardial T1 Mapping 2023 ISMRM & ISMRT Annual Meeting, Toronto, ON, Canada June 03 - 08, 2023
M Gilad, M Freiman, A Physiologically-decomposed Dwi Machine-learning Model Improves Prediction Of Response To Nac Treatment In Invasive Breast Cancer 2023 ISMRM & ISMRT Annual Meeting, Toronto, ON, Canada June 03 - 08, 2023
H Ben-Atya, M Freiman, Recovery Of T2 Distribution From Quantitative T2-weighted Mri With Physically-driven Deep Learning 2023 ISMRM & ISMRT Annual Meeting, Toronto, ON, Canada June 03 - 08, 2023

2023

S Nitzan, M Gilad, M Freiman, Fully Automated Prediction Of Pathologic Complete Response To Neoadjuvant Chemotherapy In Breast Cancer Using Deep Learning* 2023 IEEE EMBS Special Topic Conference on Data Science and Engineering in Healthcare, Medicine and Biology, Malta December 07 - 09, 2023
R Benisty, FHA Shinnawi, M Porat, A Illivitzki, M Freiman, Terminal-ileum Centerline Extraction From Magnetic Resonance Enterography Data Of Crohns Disease Patients* 2023 IEEE EMBS Special Topic Conference on Data Science and Engineering in Healthcare, Medicine and Biology, Malta December 07 - 09, 2023
E Rotman, O Afacan, S Kurugol, S Warfield, M Freiman, Super-ivim-dc, A Supervised Deep-learning With Data Consistency Approach For Ivim Model Parameter Estimation From Diffusion-weighted Mri Data Joint Annual Meeting ISMRM-ESMRMB ISMRT 31st Annual Meeting, London, England, UK May 07 - 12, 2022
MF Levital, S Khawaled, Y Chen, JA Kennedy, M Freiman, Uncertainty Assessment In Whole-body Low Dose Pet Reconstruction Using Non-parametric Bayesian Deep Learning Approach 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI), Cartagena, Colombia April 18 - 21, 2023

2022

" Fhima, J Van Eijgen, M Freiman, I Stalmans, J A. Behar", Lirot.ai: A Novel Platform For Crowd-sourcing Retinal Image Segmentations 2022 Computing in Cardiology Conference,
Y Ziselman, FH Shinnawi, M Greer, G Focht, D Turner, M Freiman, Gadolinium-free Crohns Disease Assessment From Magnetic Resonance Enterography Data 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), Kolkata, India March 28 - 31, 2022

2021

HB Atya, O Rajchert, L Goshen, M Freiman, Non Parametric Data Augmentations Improve Deep-learning Based Brain Tumor Segmentation 2021 IEEE International Conference on Microwaves, Antennas, Communications and Electronic Systems (COMCAS), Tel Aviv, Israel November 01 - 03, 2021
D Arava, M Masarwy, S Khawaled, M Freiman, Deep-learning Based Motion Correction For Myocardial T1 Mapping 2021 IEEE International Conference on Microwaves, Antennas, Communications and Electronic Systems (COMCAS), Tel Aviv, Israel November 01 - 03, 2021

2016 and before

M Freiman, Y Lamash, G Gilboa, H Nickisch, S Prevrhal, H Schmitt, M Vembar, L Goshen, Automatic Coronary Lumen Segmentation With Partial Volume Modeling Improves Lesions' Hemodynamic Significance Assessment SPIE Medical Imaging, San Diego, California, United States
V Taimouri, S Kurugol, S Clancy, M Freiman, SK Warfield, Structural And Diffusion Weighted Mri Registration For Biomarker Fusion In Crohn's Disease Diagnosis 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI 2015), Brooklyn, NY, USA April 16 - 19, 2015
M Freiman, O Pele, A Hurvitz, M Werman, L Joskowicz, Spectral-based 2d/3d X-ray To Ct Image Rigid Registration SPIE Medical Imaging, Lake Buena Vista, Florida
M Freiman, SD Voss, SK Warfield, Demons Registration With Local Affine Adaptive Regularization: Application To Registration Of Abdominal Structures 2011 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, USA March 30 - 02, 2011
M Freiman, Y Sela, Y Edrei, O Pappo, L Joskowicz, R Abramovitch, Multi-class Svm Model For Fmri-based Classification And Grading Of Liver Fibrosis SPIE Medical Imaging, San Diego, California, USA
O Cooper, M Freiman, L Joskowicz, D Lischinski, Affinity-based Constraint Optimization For Nearly-automatic Vessel Segmentation SPIE Medical Imaging, San Diego, California, USA

,

2016 and before

MN Safran, M Freiman, M Werman, L Joskowicz, Curvelet-based Sampling For Accurate And Efficient Multimodal Image Registration SPIE Medical Imaging, Lake Buena Vista, FL
M Freiman, L Joskowicz, J Sosna, A Variational Method For Vessels Segmentation: Algorithm And Application To Liver Vessels Visualization SPIE Medical Imaging, Lake Buena Vista, FL
M Freiman, Y Edrei, E Gross, L Joskowicz, R Abramovitch, Liver Metastasis Early Detection Using Fmri Based Statistical Model 2008 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France May 14 - 17, 2008

Conference Abstracts

2023

D Shats, H Hezi, G Shani, YE Maruvka, M Freiman, Patient-level Microsatellite Stability Assessment Fromwhole Slide Images Bycombining Momentum Contrast Learning Andgroup Patch Embeddings Lecture Notes in Computer Science,
G Shani, M Freiman, YE Maruvka, An Efficient Andaccurate Neural Network Tool Forfinding Correlation Between Gene Expression Andhistological Images Lecture Notes in Computer Science,
E Hanania, I Volovik, L Barkat, I Cohen, M Freiman, Pcmc-t1: Free-breathing Myocardial T1 Mapping Withphysically-constrained Motion Correction Lecture Notes in Computer Science,
J Fhima, JV Eijgen, I Stalmans, Y Men, M Freiman, JA Behar, Pvbm: A Python Vasculature Biomarker Toolbox Based Onretinal Blood Vessel Segmentation Lecture Notes in Computer Science,
N Avidan, M Freiman, Deep Learning-based Fast Mri Reconstruction: Improving Generalization Forclinical Translation Lecture Notes in Computer Science,

2022

N Korngut, E Rotman, O Afacan, S Kurugol, Y Zaffrani-Reznikov, S Nemirovsky-Rotman, S Warfield, M Freiman, Super-ivim-dc: Intra-voxel Incoherent Motion Based Fetal Lung Maturity Assessment From Limited Dwi Data Using Supervised Learning Coupled With Data-consistency Lecture Notes in Computer Science,
M Gilad, M Freiman, Pd-dwi: Predicting Response Toneoadjuvant Chemotherapy Ininvasive Breast Cancer Withphysiologically-decomposed Diffusion-weighted Mri Machine-learning Model Lecture Notes in Computer Science,

2017

M Freiman, H Nickisch, H Schmitt, P Maurovich-Horvat, P Donnelly, M Vembar, L Goshen, Learning A Sparse Database For Patch-based Medical Image Segmentation Lecture Notes in Computer Science,

2016 and before

H Nickisch, Y Lamash, S Prevrhal, M Freiman, M Vembar, L Goshen, H Schmitt, Learning Patient-specific Lumped Models For Interactive Coronary Blood Flow Simulations Lecture Notes in Computer Science,
Y Lamash, M Freiman, L Goshen, Simultaneous Multi-phase Coronary Ct Angiography Analysis For Coronary Artery Disease Evaluation Lecture Notes in Computer Science,
V Taimouri, M Freiman, O Afacan, SK Warfield, Spatially Constrained Incoherent Motion (scim) Model Improves Quantitative Diffusion-weighted Mri Analysis Of Crohns Disease Patients Lecture Notes in Computer Science,
M Freiman, O Afacan, RV Mulkern, SK Warfield, Improved Multi B-value Diffusion-weighted Mri Of The Body By Simultaneous Model Estimation And Image Reconstruction (smeir) Lecture Notes in Computer Science,
M Freiman, SD Voss, SK Warfield, Abdominal Images Non-rigid Registration Using Local-affine Diffeomorphic Demons Lecture Notes in Computer Science,
M Freiman, SD Voss, RV Mulkern, JM Perez-Rossello, SK Warfield, Quantitative Body Dw-mri Biomarkers Uncertainty Estimation Using Unscented Wild-bootstrap Lecture Notes in Computer Science,
M Freiman, A Kronman, SJ Esses, L Joskowicz, J Sosna, Non-parametric Iterative Model Constraint Graph Min-cut For Automatic Kidney Segmentation Lecture Notes in Computer Science,
M Freiman, N Broide, M Natanzon, E Nammer, O Shilon, L Weizman, L Joskowicz, J Sosna, Vessels-cut: A Graph Based Approach To Patient-specific Carotid Arteries Modeling Lecture Notes in Computer Science,
M Freiman, Y Edrei, Y Sela, Y Shmidmayer, E Gross, L Joskowicz, R Abramovitch, Classification Of Suspected Liver Metastases Using Fmri Images: A Machine Learning Approach Lecture Notes in Computer Science,
R Shamir, M Freiman, L Joskowicz, M Shoham, E Zehavi, Y Shoshan, Robot-assisted Image-guided Targeting For Minimally Invasive Neurosurgery: Planning, Registration, And In-vitro Experiment Lecture Notes in Computer Science,