Publications

Journal Articles

2023

L. Barkat, M. Freiman, H. Azhari, Image Translation of Breast Ultrasound to Pseudo Anatomical Display by CycleGAN J. of Bioengineering, Vol. 10(3). March 2023

2022

I. Guez, G. Focht, M.L.C. Greer, R. Cytter-kuint, L. Pratt, D.A. Castro, D. Turner, A.M. Griffiths, M. Freiman, Development of a multimodal machine-learning fusion model to non-invasively assess ileal Crohn’s disease endoscopic activity J. of Computer Methods and Programs in Biomedicine, Vol. 227. December 2022
S. Khawaled, M. Freiman, NPBDREG: Uncertainty Assessment in Diffeomorphic Brain MRI Registration using a Non-parametric Bayesian Deep-Learning Based Approach J. of Computerized Medical Imaging and Graphics, Vol. 99. June 2022

2021

P.A. van Diemen, M.J. Bom, R.S. Driessen, S.P. Schumacher, H. Everaars, R.W. de Winter, P.M. van de Ven, M. Freiman, L. Goshen, D. Heijtel, E. Langzam, J.K. Min, J.A. Leipsic, P.G. Raijmakers, A.C. van Rossum, I. Danad, P. Knaapen, Prognostic Value of RCA Pericoronary Adipose Tissue CT-Attenuation Beyond High-Risk Plaques, Plaque Volume, and Ischemia J. American College of Cardiology Imaging (JACC_Img), . August 2021

2019

M. Freiman, R. Manjeshwar, L. Goshen, Unsupervised Abnormality Detection through Mixed Structure Regularization (MSR) in Deep Sparse Autoencoders Medical Physics, Vol. 46(5). March 2019

2018

Y. Lamash, S. Kurugol, M. Freiman, J.M. Perez-Rossello, M.J. Callahan, A. Bousvaros, S.K. Warfield, Curved Planar Reformatting and CNN-Based Segmentation of the Small Bowel for Visualization and Quantitative Assessment of Pediatric Crohn's Disease from MRI J. of Magnetic Resonance Imaging (JMRI), Vol. 49(6). October 2018
M. Freiman, H. Nickisch, H. Schmitt, M. Vembar, P. Maurovich-Horvat, P.M. Donnelly, L. Goshen, A Functionally-Personalized Boundary Condition Model to Improve Estimates of Fractional Flow Reserve with CT (CT-FFR) Medical Physics, Vol. 45(3). January 2018

2017

S. Kurugol, M. Freiman, O. Afacan, L. Domachevsky, J.M Perez-Rossello, M.J. Callahan, S.K.Warfield, Compensating for the Effect of Motion on Parameter Estimation in Abdominal Diffusion-Weighted MRI by Simultaneous Image Registration and Model Estimation Medical Image Analysis, Vol. 39 124-132. July 2017
M. Freiman, H. Nickisch, S. Prevrhal, H. Schmitt, P. Maurovich-Horvat, P.M. Donnelly, M. Vembar, L. Goshen, Improving CCTA Based Lesions' Hemodynamic Significance Assessment by Accounting for Partial Volume Modeling in Automatic Coronary Lumen Segmentation Medical Physics, Vol. 44(3) 1040-1049. March 2017

2016 and before

S. Kurugol, M. Freiman, O. Afacan, J.M Perez-Rossello, M.J. Callahan, S.K. Warfield, Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) for Diffusion-Weighted MRI Medical Image Analysis, Vol. 32 173-183. March 2016
S. Bairdain, M. Freiman, M.J. Callahan, S.K. Warfield, Incoherent-Motion Magnetic Resonance Imaging and Pediatric Crohn Disease Archives of Clinical and Experimental Surgery, Vol. 5(2) 116-120. January 2016
V. Taimouri, O. Afacan, J.M Perez-Rossello, M.J. Callahan, R.V. Mulkern, S.K. Warfield, M. Freiman, Spatially Constrained Incoherent Motion (SCIM) Method Improves Diffusion-Weighted MRI Signal Decay Analysis in the Liver and Spleen Medical Physics, Vol. 42(4) 1895-1903. April 2015
Y. Edrei, M. Freiman, M. Sklair, G. Tsarfati, E. Gross, L. Joskowicz, R. Abramovitch, Quantitative Functional MRI Biomarkers Improved Early Detection of Colorectal Liver Metastases J. of Magnetic Resonance Imaging (JMRI), Vol. 39(5) 1246-1253. September 2014
M. Freiman, J.M. Perez-Rossello, M.J. Callahan, S.D. Voss, K. Ecklund, R.V. Mulkern, S.K. Warfield, Reliable Estimation of Incoherent Motion Parametric Maps from Diffusion-weighted MRI Using Fusion Bootstrap Moves Medical Image Analysis, Vol. 17(3) 325-362. January 2013
M. Freiman, J.M. Perez-Rossello, M.J. Callahan, M. Bittman, R.V. Mulkern, A. Bousvaros, S.K. Warfield, Characterization of fast and Slow Diffusion from Diffusion-Weighted MRI of Pediatric Crohn's Disease J. of Magnetic Resonance Imaging (JMRI), Vol. 37(1) 156-163. January 2013
M. Freiman, L. Joskowicz, N. Broide, M. Natanzon, E. Nammer, O. Shilon, L. Weizman, J. Sosna, Patient-Specific Carotid Arteries Modeling: A Nearly Automatic Model-Based Graph-Cut Approach Int. J. of Computer Assisted Radiology and Surgery (IJCARS), Vol. 7(5) 799-812. May 2012
M. Freiman, S.D Voss, R.V. Mulkern, J. Perez-Rossello, M.J. Callahan, S.K. Warfield, In-Vivo Assessment of Optimal b-Value Range for Perfusion-Insensitive Apparent Diffusion Coefficient Imaging Medical Physics, Vol. 39(8) 4832-4839. January 2012
Y. Sela, M. Freiman, E. Dery, R. Safadi, O. Pappo, L. Joskowicz, R. Abramovitch, fMRI Based Hierarchical SVM Model for the Classification and Grading of Liver Fibrosis IEEE Trans. Biomedical Engineering, Vol. 58(9) 2574-2581. January 2011
R. Hameeteman, M.A. Zuluaga, M. Freiman, L. Joskowicz, O. Cuisenaire, L.F. Valencia, M.A. Gülsün, K. Krissian, J. Mille, W.C. Wong, M. Orkisz, H. Tek, M. H. Hoyos, F. Benmansour, A.C. Chung, S. Rozie, M. van Gils, L. van den Borne, J. Sosna, P. Berman, N. Cohen, P.C. Douek, I. Sánchez, M. Aissat, M. Schaap, C.T. Metz, G.P. Krestin, A. van der Lugt, W.J. Niessen T. van Walsum, Evaluation Framework for Carotid Bifurcation Lumen Segmentation and Stenosis Grading Medical Image Analysis, Vol. 15(4) 477-488. January 2011
M. Freiman, M. Werman, L. Joskowicz, Curvelets: A Patient-Specific Prior for Accurate Multi-Modal Image Registration Medical Image Analysis, Vol. 15(1) 125-132. January 2011
M. Freiman, O. Cooper, D. Lischinski, L. Joskowicz, Liver Tumors Segmentation from CTA Images Using Voxels Classification and Affinity Constraint Propagation Int. J. of Computer Assisted Radiology and Surgery (IJCARS), Vol. 6(2) 247-255. June 2010
R. Shamir, M. Frieman, L. Joskowicz, S. Spektor, Y. Shoshan, Surface-Based Facial Scan Registration in Neuronavigation Procedures: A Clinical Study J. of Neurosurgery, Vol. 111(6) 1201-1206. January 2009
M. Freiman, Y. Taieb, O. Eliassaf, L. Joskowicz, Y. Azraq, J. Sosna, An Iterative Bayesian Approach for Nearly Automatic Liver Segmentation: Algorithm and Validation Int. J. of Computer Assisted Radiology and Surgery (IJCARS), Vol. 3(5) 439-446. January 2008
L. Joskowicz, M. Freiman, R. Shamir, M. Shoham, E. Zehavi, Y. Shoshan, Image-Guided System with Miniature Robot for Precise Positioning and Targeting in Keyhole Neurosurgery Computer-Aided Surgery, Vol. 11(4) 181-193. January 2006

Conference Papers

2024

S. Nitzan, M. Gilad, M. Freiman, Fully Automated Prediction of Pathologic Complete Response to Neoadjuvant Chemotherapy in Breast Cancer Using Deep Learning 2023 IEEE EMBS Special Topic Conference on Data Science and Engineering in Healthcare, Medicine and Biology, Malta . December 7-9 2023

2023

Y. Zaffrani-Reznikov, O. Afacan, S. Kurugol, S. Warfield, M. Freiman, qDWI-Morph: Motion-compensated quantitative Diffusion-Weighted MRI analysis for fetal lung maturity assessment 32nd Joint Annual ISMRM & ISMRT Meeting and Exhibition, Toronto, Canada . June 3-8 2023
E. Hanania, L. Barkat, I. Cohen, H. Azhari, M. Freiman, Deep-learning-based Group-wise Motion Correction for Myocardial T1 Mapping 32nd Joint Annual ISMRM & ISMRT Meeting and Exhibition, Toronto, Canada . June 3-8 2023
M. Gilad, M. Freiman, A Physiologically-Decomposed DWI machine-learning model improves prediction of response to NAC treatment in invasive breast cancer 32nd Joint Annual ISMRM & ISMRT Meeting and Exhibition, Toronto, Canada . June 3-8 2023
H. Ben-Atya, M. Freiman, Recovery of T2 distribution from quantitative T2-weighted MRI with physically-driven deep learning 32nd Joint Annual ISMRM & ISMRT Meeting and Exhibition, Toronto, Canada . June 3-8 2023

2022

E. Hanania, L. Barkat, I. Cohen, H. Azhari, M. Freiman, StyleReg: Style Transfer as Preprocess Step for Myocardial T1 Mapping Medical Imaging meets NeurIPS workshop, New Orleans, USA . December 2-8 2022
E. Rotman, O. Afacan, S. Kurugol, S. Warfield, M. Freiman, SUPER-IVIM-DC, A supervised deep-learning with data consistency approach for IVIM model parameter estimation from Diffusion-Weighted MRI data 32nd Joint Annual ISMRM & ISMRT Meeting and Exhibition, London, England, UK . May 7-12 2022

2021

S. Nemirovsky-Rotman, E. Rotman, O. Afacan, S. Kurugol, S. Warfield, M. Freiman, MELoDee – Multi-Exponential model Learning based on Deep Neural Networks for Quantitative MRI Bio-Markers Estimation Medical Imaging meets NeurIPS workshop, Vancouver, Canada . December 13-18 2021
I. Guez, G. Focht, M.L. Greer, R. Cytter-Kuint, L. Pratt, D. Castro, D. Turner, A.M. Griffiths, M. Freiman, on behalf of the ImageKids study group, Machine-Learning Models Improve Magnetic Resonance Enterography based Assessment of Mucosal Healing in Pediatric Crohn's Disease RSNA 2021, Chicago, USA . November 28 - December 2 2021
S. Nemirovsky-Rotman, E. Rotman, O. Afacan, S. Kurugol, S. Warfield, M. Freiman, MELoDee – Multi-Exponential model Learning based on Deep Neural Networks for Quantitative MRI Bio-Markers Estimation Israel Machine Vision Conference (IMVC), Israel . October 26 2021
S. Khawaled, M. Freiman, Non-Parametric Bayesian Deep-learning Method for Brain MRI Registration Israel Machine Vision Conference (IMVC), Israel . October 26 2021
I. Guez, G. Focht, M.L. Greer, R. Cytter-Kuint, L. Pratt, D. Castro, D. Turner, A.M. Griffiths, M. Freiman, on behalf of the ImageKids study group, Development of a Machine-Learning Model to Impute Terminal Ileum Simple Endoscopic Score of Crohn´s Disease (SESCD) using Magnetic Resonance Enterography (MRE) 6th World Congress of Pediatric Gastroenterology, Hepatology and Nutrition, Vienna, Austria . June 10-13 2021
S. Nemirovsky-Rotman, E. Rotman, O. Afacan, S. Kurugol, S. Warfield, M. Freiman, Physically Motivated Deep-Neural Networks of the Intravoxel Incoherent Motion Signal Decay Model for Quantitative Diffusion-Weighted MRI 29th Joint Annual ISMRM & ISMRT Meeting and Exhibition, Vienna, Austria . May 15-20 2021
S. Khawaled, M. Freiman, Assessment of Uncertainty in Brain MRI Deformable Registration 29th Joint Annual ISMRM & ISMRT Meeting and Exhibition, Vienna, Austria . May 15-20 2021
P.A. Van Diemen, M.J. Bom, R.S. Driessen, S. Schumacher, H. Everaars, R.W. De Winter, P.M. Van De Ven, M. Freiman, E. Langzam, L. Goshen, D. Heijtel, J.K. Min, J.A. Leipsic, P.G. Raijmakers, A.C. Van Rossum, I. Danad, P. Knaapen, The Prognostic Value of Pericoronary Adipose Tissue CT-Attenuation Beyond High-Risk Plaques, Plaque volume, and Myocardial Ischemia American College of Cardiology Scientific session (ACC), Virtual . May 2021

2020

S. Khawaled, M. Freiman, A Bayesian Unsupervised Deep-Learning Based Approach for Deformable Image Registration Medical Imaging meets NeurIPS workshop, Vancouver, Canada . December 11 2020
P.A. Van Diemen, M.J. Bom, R.S. Driessen, H. Everaars, R.W. De Winter, P.M. Van De Ven, M. Freiman, L. Goshen, E. Langzam, J.K. Min, J.A. Leipsic, P.G. Raijmakers, A.C. Van Rossum, I. Danad, P. Knaapen, Pericoronary Adipose Tissue Attenuation Leads to Improved Prognostication Beyond Atherosclerotic Burden and High-Risk Plaques in Patients with Suspected Coronary Artery Disease European Association for Cardiovascular Imaging (EACVI) Congress, Virtual . December 4-5 2020
P.A. Van Diemen, M.J. Bom, R.S. Driessen, H. Everaars, R.W. De Winter, P.M. Van De Ven, M. Freiman, L. Goshen, E. Langzam, D. Heijtel, J.K. Min, J.A. Leipsic, P.G. Raijmakers, A.C. Van Rossum, I. Danad, P. Knaapen, Incremental Prognostic Value of Pericoronary Adipose Tissue Attenuation on Top of Comprehensive CCTA Assessment European Society of Cardiology (ESC) Congress, Virtual . August 29 - September 1 2020

2018

Y. Lamash, S. Kurugol, M. Freiman, S.K. Warfield, Semi-Automatic Method for Generating Multiplanar Reformatting Views of MR Post-Contrast T1-Weighted Images for Visualizing and Assessing Pediatric Crohn's Disease 26th Joint Annual ISMRM & ISMRT Meeting and Exhibition, Paris, France . June 16-21 2018

2017

S. Kurugol, M. Freiman, J. Goldsmith, R. Didier, O. Afacan, J.M. Perez-Rossello, M.J. Callahan, A. Bousvaros, S.K.Warfield, Evaluation of Motion-Compensated Spatially Constrained IVIM (MC-SCIM) Model of Diffusion-Weighted MRI for Assessment of Fibrosis in Crohn's Disease Using Surgical Histopathology Scores 26th Joint Annual ISMRM & ISMRT Meeting and Exhibition, Honolulu, HI, USA . May 2017
H. Nickisch, M. Freiman, S. Prevrhal, M. Vembar, P. Donnely, P. Maurovich-Horvat, L. Goshen, H. Schmitt, Improved On-Site FFR-CT Accuracy by Coronary Tree Standardisation The 2017 European Congress of Radiology (ECR 2017), Vienna, Austria . March 2017

Conference Abstracts

2023

M. Levital, S. Khawaled, M. Freiman, Uncertainty assessment in Whole-Body Low Dose PET Reconstruction using Non-parametric Bayesian Deep Learning Approach IEEE International Symposium on Biomedical Imaging (ISBI), Cartagena de Indias, Colombia . April 18-21, 2023

2022

Y. Zaffrani-Reznikov, O. Afacan, S. Kurugol, S. Warfield, M. Freiman, qDWI-Morph: Motion-compensated quantitative Diffusion-Weighted MRI analysis for fetal lung maturity assessment European Conference on Computer Vision-Medical Computer Vision Workshop (ECCV-MCV), Tel Aviv, Israel . October 23-27, 2022
J. Fhima, JV. Eijgen, I. Stalmans, Y. Men, M. Freiman, JA. Behar, PVBM: A Python Vasculature Biomarker Toolbox Based on Retinal Blood Vessel Segmentation European Conference on Computer Vision-Medical Computer Vision Workshop (ECCV-MCV), Tel Aviv, Israel . October 23-27, 2022
S. Khawaled, M. Freiman, NPB-REC: Non-parametric Assessment of Uncertainty in Deep-Learning-Based MRI Reconstruction from Undersampled Data Medical Image Computing and Computer Assisted Intervention-Machine Learning for MEdical Image Reconstruction 5th International Workshop – MICCAI-MLMIR, Singapore Part of the Lecture Notes in Computer Science book series (LNCS), Vol. 13587, pages 14-23.. September 22, 2022
N. Korngut, E. Rotman, O. Afacan, S. Kurugol, Y. Zaffrani-Reznikov, S. Nemirovsky-Rotman, S. Warfield, M. Freiman, SUPER-IVIM-DC: Intra-voxel incoherent motion based Fetal lung maturity assessment from limited DWI data using supervised learning coupled with data-consistency Medical Image Computing and Computer Assisted Intervention – MICCAI, Singapore . September 18-22, 2022
M. Gilad, M. Freiman, PD-DWI: Predicting response to neoadjuvant chemotherapy in invasive breast cancer with Physiologically-Decomposed Diffusion-Weighted MRI machine-learning model Medical Image Computing and Computer Assisted Intervention – MICCAI, Singapore . September 18-22, 2022
Y. Ziselman, M. Freiman, F. Haj ali Shinnawi, M. Louise-Greer, G. Foch, D. Turner, Gadolinium-free Crohn's disease assessment from Magnetic Resonance Enterography data. IEEE International Symposium on Biomedical Imaging (ISBI), Kolkata, India . March 28-31, 2022

2021

H. Ben-Atya, O. Rajchert, L. Goshen, M. Freiman, Non-Parametric Data Augmentations Improve Deep-learning based Brain Tumor Segmentation IEEE International Conference on Microwaves, Antennas, Communications and Electronic Systems (COMCAS), Tel Aviv, Israel . November 1-3, 2021
D. Arava, M. Masarwy, S. Khawaled, M. Freiman, Deep-Learning based Motion Correction for Myocardial T1 Mapping IEEE International Conference on Microwaves, Antennas, Communications and Electronic Systems (COMCAS), Tel Aviv, Israel . November 1-3, 2021

2017

M. Freiman, H. Nickisch, H. Schmitt, M. Vembar, P. Maurovich-Horvat, P.M. Donnelly, L. Goshen, Learning a Sparse Database for Patch-Based Medical Image Segmentation MICCAI 2017 Workshop on Patch-based Techniques in Medical Imaging (PATCH-MI 2017), Quebec City, Quebec, Canada Lecture Notes in Computer Science, 10530:47-54, Springer. September 10-14, 2017